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Engineering Biology in Cambridge

 

The SynBio Fund supported innovative, open and interdisciplinary projects relevant to Synthetic Biology over 2015-16. Eighteen 6-month projects received £4k each, with an additional £1k awarded on completion for follow-on and outreach. The aim of the fund was to promote the development of Synthetic Biology as an interdisciplinary field at the University of Cambridge - to facilitate exchange between the biological and physical sciences, engineering and humanities, and the development of open technologies and responsible innovation in the context of Synthetic Biology.

 

 

Read more at: Open source 3D-printed microscope

Open source 3D-printed microscope

Many tasks in biology require tiny, accurate motion – achieved with expensive hardware. We have used inexpensive, 3D printed parts to make high performance mechanisms for low cost science. Our best example is a microscope small and cheap enough to be left in an incubator or fume hood for days or weeks. This will enable new science, for example by observing cells as they grow in an incubator. We will improve this microscope’s imaging capabilities (adding fluorescence and phase contrast) and demonstrate its use in an incubator. We will also show that printed mechanisms can be used for other tasks, for example the mechanical manipulation of micropipettes for microinjection or patch clamping.


Read more at: A piezoelectric bio-platform to image and stimulate cellular interactions

A piezoelectric bio-platform to image and stimulate cellular interactions

To develop a novel piezoelectric platform to probe mechanobiological interactions. This pilot project serves to validate the basic process and has several key objectives. The first goal is to successfully grow a viable cell colony on the piezoelectric matrix. If that can be achieved, then we can determine whether or not the traction forces exerted by the cell culture can be detected and monitored as the culture grows.


Read more at: An extended DNA recombinase toolkit for mammalian systems

An extended DNA recombinase toolkit for mammalian systems

Identifying, screening and optimising a novel recombinase toolkit for mammalian cells.


Read more at: Bio-Hackathon

Bio-Hackathon

The Cambridge University Technology and Enterprise Club (CUTEC) has been running events to support young technologists for the last 13 years. This year our committee is passionate about supporting the transition from idea to prototype in biology and with this in mind we ran a Bio-Hackathon in collaboration with the London Biohackspace and with Bento Bio Works.


Read more at: CamOptimus

CamOptimus

Self-contained user-friendly multi-parameter optimisation platform for non-specialist experimental biologists


Read more at: CELLUWIN: 3D printing for cellulose

CELLUWIN: 3D printing for cellulose

For a feasibility study on creating 3D structures, using raw cellulose as a starting material, as a proof of principle for the use of cellulose as a modern building material.


Read more at: Development of a microfluidic device for high-throughput analysis of genetic circuits in plant protoplasts.

Development of a microfluidic device for high-throughput analysis of genetic circuits in plant protoplasts.

This project aims to develop a high-throughput screen for the analysis of promoter sequences driving expression of a reporter gene in plant protoplasts. We envisage this device to be applicable to a range of plant species and cell types, and by coupling it to libraries of regulatory elements identified by DNase-Seq, it will rapidly increase the rate of identifying promoters for biotechnological applications.


Read more at: DIY Biolab

DIY Biolab

DIY Biolab plan to build and document open hardware for molecular biology.


Read more at: Faster engineering for cyanobacteria

Faster engineering for cyanobacteria

Developing a series of plasmids and a method to rapidly increase production of cyanobacterial mutants with multiple alterations.


Read more at: Flexible, low cost, live­ cell imaging platform

Flexible, low cost, live­ cell imaging platform

Continued development of a flexible, low cost, live-imaging platform for long term monitoring of cell behaviour in vitro


Read more at: High Performance Mechanisms for Low Cost Science

High Performance Mechanisms for Low Cost Science

Developing fluorescence and phase contrast functions in a low-cost, 3D-printed microscope and demonstrating its use in an incubator.


Read more at: Interactive web­-based software for genetic circuit design

Interactive web­-based software for genetic circuit design

This project aims to develop a rigorous design-modeling web-based tool for synthetic biology using a novel design methodology that has been recently developed in the Control Group (Engineering Department).


Read more at: Novel bioluminescent reporters

Novel bioluminescent reporters

Finding, testing and generating optimised bioluminescent reporter vectors for use in various organisms.


Read more at: Reliable IP-free system for inter-chassis transfer of the high molecular weight DNA

Reliable IP-free system for inter-chassis transfer of the high molecular weight DNA

This project aims to develop an IP-free system for transfer of the high molecular weight DNA from E. coli to M. polymorpha. This includes development of the plant-specific iBACs for the reliable transfer and integration of the high molecular weight DNA into the M. polymorpha genome. Alternative methods for interchassis DNA transfer, such as integrative and conjugative elements (ICEs) will be also explored.


Read more at: SynBio Hub

SynBio Hub

The SynBio Hub platform will allow the scientific community to monitor, review and discover the latest developments in synthetic biology Intellectual Property (IP). The open source platform will initially track all IP being published via the US patent office (USPTO) for relevance to synthetic biology.


Read more at: SynBio Student Society

SynBio Student Society

To establish the Cambridge University Synthetic Biology Society (CUSBS) to promote the field of synthetic biology amongst the student community and within schools in Cambridge. To continue development of OpenScope and other open technology projects.


Read more at: Synthesis of novel optimised lux reporters for eukaryotic systems

Synthesis of novel optimised lux reporters for eukaryotic systems

This project would build on our previous work identifying and optimizing bacterial luciferases from a variety of marine bacteria. We propose to generate versions of these reporters for eukaryotic systems, including the production of Nanolantern-like systems for lux luciferases.


Read more at: System with bacteria metabolic and biochemical network information

System with bacteria metabolic and biochemical network information

The idea is to develop a computational system and corresponding web site to couple information on metabolic and biochemical networks within bacteria (focussing initially on cyanobacteria) with networks of protein evolutionary history and homology. The system is designed to be easily used by biologists with minimal computing experience. The main principle is that the variability in the enzymatic components of pathways across a large sample of different genomes provides a valuable resource for the understanding and manipulation of biosynthesis.


Read more at: The Green Mother Machine: a microfluidics device for cyanobacteria

The Green Mother Machine: a microfluidics device for cyanobacteria

Optimising a microfluidic chemostat for experiments using cyanobacteria, including growth and feeding channels.


Read more at: Self­ cloning brewer’s yeast project progress

Self­ cloning brewer’s yeast project progress

Abstract Terpene flavor compounds are an important target for food improvement in a number of areas. One such area is the brewing of beer, particularly newer “craft” beers that feature large quantities of newer American varieties of hops bred for their aroma and flavor characteristics rather than...


Read more at: Low cost solution for high throughput bacterial electrotransformation project folder

Low cost solution for high throughput bacterial electrotransformation project folder

All documents and images for the project